This folder contains all data and software needed to reproduce the results
in the Judson et. al manuscript "Integrated Model of Chemical Perturbations 
of a Biological Pathway Using 18 In Vitro High Throughput Screening Assays 
for the Estrogen Receptor"

All software is written in R

To run the model, install R and the libraries 
- grDevices
- RColorBrewer
- stringr
- pca3d
- openxlsx

In the R folder, execute the run.all method with all input variables set to TRUE

Results of the model go into the output and plots files

The full set of outputs already exist in these folders

The manuscript folder contains the submitted version of the manuscript and all supplemental files

